PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0145s0016.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 399aa    MW: 42626.4 Da    PI: 8.4777
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0145s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-09526325
                          S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                          +e Cr+f+r G C++G rCkF+H
  Sphfalx0145s0016.1.p  5 QEVCRDFQR-GNCRFGTRCKFSH 26
                          799******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-8228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.084229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5430IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-7627IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSRRQEVCRD FQRGNCRFGT RCKFSHQLPQ NQQPQSNAFD SGRRHSPQQQ GGFGDRGRNS  60
FEALSNANSS QKPQQQVPLK DHKCNDPRVC KEQIKDDMAH EHPLFWRLTS YGHWKFLPND  120
ISGDVSPEEL RALAYDSAKQ GLSLHQIAQK EASMVAAKNA EFESLLRNPY QSPVAQRAGF  180
TPVAFPSSPF ASTPQPGGNM VFGVPSTPNV GFGQPISPFG VAAGASPQSI GGFGSSFNTK  240
GPIVPAPNTS TFLGNAYPQP DQNVFGTQLP PSQNFVGMQS FNGFGNTNSG IAGGFGIGGT  300
GSAGPVPISP FNSPVPNMAP TLGFGNITQS PPPLGASLST STTPLPASPF TSQVLSGTSP  360
FTKSSLEGQL PVADDIWLKE TWKLGEIPEQ EPPSYVRY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-43C3H family protein